Peter Vize

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• Session, A.M., Uno. Y., Kwon, T., Chapman, J.A., Toyoda, A., Takahashi, S., Fukui, A., Hikosaka, A., Suzuki, A., Kondo, M., van Heeringen, S.J., Quigley, I., Heinz, S., Ogino, H., Ochi, H., Hellsten, U., Lyons, J.B., Simakov, O., Putnam, N., Stites, J., Kuroki, Y., Tanaka, T., Michiue, T., Watanabe, M., Bogdanovic, O., Lister, R., Georgiou, G., Paranjpe, S.S., van Kruijsbergen, I., Shu, S., Carlson, J., Kinoshita, T., Ohta, Y., Mawaribuchi, S., Jenkins, J., Grimwood, J., Schmutz, J., Mitros, T., Mozaffari, S.V., Suzuki, Y., Haramoto, Y., Yamamoto, T.S., Takagi, C., Heald, R., Miller, K., Haudenschild, C., Kitzman, J., Nakayama, T., Izutsu, Y., Robert, J., Fortriede, J., Burns, K., Lotay, V., Karimi, K., Yasuoka, Y., Dichmann, D.S., Flajnik, M.F., Houston, D.W., Shendure, J., DuPasquier, L., Vize, P.D., Zorn, A.M., Ito, M., Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS. (2016) Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538(7625): 336-343.
• A.R.Deans et al. (inc. P.D. Vize), the Phenoscape Consortium. (2014) Finding our way through phenotypes. PLoS Biology, in press.
• Karpinka, J.B., Fortreide, J.D., Burns, K.A., James-Zorn, C., Ponferrada, V.G., Lee, Jacqueline, Karimi, K., Zorn, A.M. and Vize, P.D. (2014). Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. Nucleic Acids Res. 43: doi:10.1093/nar/gku956
• Karimi, K. and Vize, P.D. (2014). The virtual Xenbase. Databases doi: 10.1093/database/bau108
• Bhalla, N., Bentley, P.J., Vize, P.D. and Jacob, C. (2014). Staging the self-assembly process: inspiration from biological development. Artif. Life 20: 29-59.
• Reichman, J.R. and Vize, P.D. (2014). Separate introns gained within short and long soluble peridinin-chlorophyll a-protein genes during radiation of Symbiodinium (Dinophyceae) clade A and B lineages. PLoS One 9(10); e110608
• Davies, S.W., Matz, M.V. and Vize, P.D. (2013). Ecological complexity of coral recruitment processes: effect of herbivores on coral recruitment and growth depends upon substrate properties and coral species. PLoS One 8 (9): e72830
• Segerdell, E., Ponferrada V.G., James-Zorn C., Burns, K., Fortriede J., Dahdul W., Vize, P.D. and Zorn, A.M. (2013) XAO: an enhanced ontology of Xenopus anatomy and development.  Journal of Biological Semantics 4:31 doi:10.1186/2041-1480-4-31
• Neufeld, S.J., Zhou, X, Vize, P.D. and Cobb, J. (2013). mRNA fluorescence in situ hybridization to determine overlapping gene expression in whole-mount mouse embryos. Dev. Dyn. doi 10.1002/dvdy.23993
• James-Zorn C , Ponferrada VG, Jarabek CJ, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Bowes JB, Zorn AM and Vize PD. (2013) Xenbase; expansion and updates of the Xenopus model organism database. Nucleic Acids Res. 41: D865-870. DOI 10.1093/nar/gks1025
• Bowes, J., Snyder, K., James-Zorn, C., Ponferrada, V.G., Jarabek, C.J., Burns, K.A., Bhattacharyya, B., Zorn, A.M. and Vize, P.D. (2013). The Xenbase literature curation process. Database 2013: bas046 doi:10.1093/database/bas046
• Hilton, J.D., Brady, A.K., Spaho, S.A. and Vize, P.D. (2012). Photoreception and signal transduction in corals; proteomic and behavioral evidence for cytoplasmic calcium as a mediator of light responsivity. Biological Bulletin 223: 291-299.
• Vize, P.D., Hilton, J.D. and Brady, A.K. (2012). Biological clock driven circadian transcriptional cycles in Acropora millepora. Proc. 12th ICRS. 12A-5; 1-5.
• Brady, A.K., Snyder, K. and Vize, P.D. (2011). Circadian cycles of gene expression in the coral, Acropora millepora. PLoS One 6(9): e25072
• Davies, S.W., Matz, M.V. and Vize, P.D. (2013). Ecological complexity of coral recruitment processes: effect of herbivores on coral recruitment and growth depends upon substrate properties and coral species. PLoS One 8 (9): e72830
• Vize, P.D., Hilton, J.D. and Brady, A.K. (2012). Biological clock driven circadian transcriptional cycles in Acropora millepora. Proc. 12th ICRS. 12A-5; 1-5. 
• Hilton, J.D., Brady, A.K., Spaho, S.A. and Vize, P.D. (2012) Photoreception and signal transduction in corals; proteomic and behavioral evidence for cytoplasmic calcium as a mediator of light responsivity. Biological Bulletin 223: 291-299. 
• Brady. A.K., Snyder, K. and Vize, P.D. (2011). Circadian cycles of gene expression in the coral, Acropora millepora. PLoS One 6(9): e25072 
• Hellsten, U, Harland, R.M., Gilchrist, M.J., Hendrix, D., Jurka, J., Kapitonov, V., Ovcharenko, I., Putnam, N.H., Shu, S., Taher, L, Blitz, I.L., Blumberg, B., Dichmann, D.S., Dubchak, I., Amaya, E., Detter, J.C., Fletcher, R., Gerhard, D.S., Goodstein, D., Graves, T., Grigoriev, I.V., Grimwood, .J, Kawashima, T., Lindquist, E., Lucas, S.M., Mead, P.E., Mitros, T., Ogino, H., Ohta, Y., Poliakov, A.V., Pollet, N., Robert, J., Salamov, A., Sater, A.K., Schmutz, J., Terry, A., Vize, P.D., Warren, W.C., Wells, D., Wills, A., Wilson, R.K., Zimmerman, L.B., Zorn, A.M., Grainger, R., Grammer, T., Khokha, M.K., Richardson, P.M. and Rokhsar, D.S. (2010) The genome of the western clawed frog Xenopus tropicalis. Science 328: 633-636. 
• A.K.Brady, J.D. Hilton and Peter D. Vize (2009). Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response. Coral Reefs,28: 677-680 
• Vize, P.D. (2009) Transcriptome analysis of the circadian regulatory network in the coral, Acropora millepora. Biological Bulletin 216; 131-137. (Editors pick- free full content)